CDR Tickets

Issue Number 5319
Summary [Summaries] Template change to remove Summ Section Metadata elements
Created 2024-02-08 14:07:39
Issue Type Task
Submitted By Juthe, Robin (NIH/NCI) [E]
Assigned To Englisch, Volker (NIH/NCI) [C]
Status Closed
Resolved 2024-02-09 07:46:28
Resolution Fixed
Path /home/bkline/backups/jira/ocecdr/issue.391021
Description

Please remove the "Diagnosis" and "Intervention" Summary section metadata elements from the template. We'd like to keep the "SectionType" element as a reminder to add the "Changes to Summary" type for the changes section.

Comment entered 2024-02-09 07:46:28 by Kline, Bob (NIH/NCI) [C]

Changes installed on CDR DEV.

modified:   XMetaL/Rules/Summary.ctm
modified:   XMetaL/Template/Cdr/PatientSVPCSummary.xml
modified:   XMetaL/Template/Cdr/SpanishPatientSVPCSummary.xml
modified:   XMetaL/Template/Cdr/Summary.xml

None of the summary templates had Intervention in the metadata.

https://github.com/NCIOCPL/cdr-client/commit/44b6e66 in branch {}ocecdr-5319{}.

Comment entered 2024-02-09 14:17:10 by Englisch, Volker (NIH/NCI) [C]

Oops!  Sorry, , I hadn't seen that you already made the changes.  

Please feel free to grab the ticket back from me.

Comment entered 2024-02-09 14:30:42 by Englisch, Volker (NIH/NCI) [C]

I'd like to mention that the templates include a lot of sections with section names that are not the two we had identified that are used by the filters:

  • Introductory Text

  • Changes to summary

The following are all section type values that are used as part of the templates:

  • Cancer description

  • Classification by stage

  • Clinical description

  • Current clinical trials

  • Diagnostic tests

  • Genetic aspects

  • Incidence

  • Organ description

  • Post-treatment considerations

  • Prevention methods

  • Prognostic factors

  • Rationale for prevention

  • Resources

  • Risk factors

  • Standard treatment

  • Symptoms

  • Treatment in clinical trials

  • Treatment options by stage

I am wondering if these types should all be removed from the templates if they aren't used for anything.  If the users delete of of these entries we should remove them from the templates.

Comment entered 2024-03-07 12:08:01 by Osei-Poku, William (NIH/NCI) [C]

I asked  CIAT users about this, and some of the section names used on a regular basis are the two already identified and the following. 

Current clinical trials

Treatment options by stage

Treatment options

Classification by stage

However, since these are not used for publishing, it should be OK to remove them from the default template as we discuss whether it is necessary to continue to use them in summaries, if they are being used for anything else.

Comment entered 2024-03-11 15:13:54 by Englisch, Volker (NIH/NCI) [C]

The following templates have been updated to remove the Section type except for "Introduction" and "Changes to this Summary".

  • modified:   Template/Cdr/PatientPreventionSummary.xml

  • modified:   Template/Cdr/PatientPreventionSummaryES.xml

  • modified:   Template/Cdr/PatientScreeningSummary.xml

  • modified:   Template/Cdr/PatientScreeningSummaryES.xml

  • modified:   Template/Cdr/PatientSummary.xml

  • modified:   Template/Cdr/SpanishPatientSummary.xml

This is ready for review on DEV.

Comment entered 2024-03-28 11:58:15 by Osei-Poku, William (NIH/NCI) [C]

It's looking like the changes have been wiped out. I am seeing all these options still available in either a new summary or an existing summary.

Comment entered 2024-03-28 12:16:57 by Englisch, Volker (NIH/NCI) [C]

That is correct!  This ticket is for a change of the templates.  If you want to change the list of values that would require a schema change.

The task was to remove the SectionType values from the templates.

Comment entered 2024-03-28 14:24:08 by Osei-Poku, William (NIH/NCI) [C]

As discussed in the CDR/EBMS meeting today, please remove the SectMetadata block from the default template except for the two cases where they are needed in the filters.  Thanks!

Comment entered 2024-04-01 14:17:03 by Englisch, Volker (NIH/NCI) [C]

The following templates have been updated to completely remove the section meta data piece:

  • modified:   PatientPreventionSummary.xml

  • modified:   PatientPreventionSummaryES.xml

  • modified:   PatientSVPCSummary.xml

  • modified:   PatientScreeningSummary.xml

  • modified:   PatientScreeningSummaryES.xml

  • modified:   PatientSummary.xml

  • modified:   SpanishPatientSVPCSummary.xml

  • modified:   SpanishPatientSummary.xml

  • modified:   Summary.xml

https://github.com/NCIOCPL/cdr-client/commit/84f1b38

This is ready for review on DEV.

Comment entered 2024-04-11 12:20:05 by Osei-Poku, William (NIH/NCI) [C]

Verified on DEV. Please install on QA. Thanks!

Comment entered 2024-04-15 13:59:09 by Englisch, Volker (NIH/NCI) [C]

All modified template files have been copied to QA.  This is ready for review.

Comment entered 2024-04-18 12:31:38 by Osei-Poku, William (NIH/NCI) [C]

Verified on QA. Please install on PROD. Thanks!

Comment entered 2024-04-18 15:02:04 by Englisch, Volker (NIH/NCI) [C]

All modified template files have been copied to STAGE and PROD.

Please verify and close this bug.

Comment entered 2024-04-25 10:50:53 by Osei-Poku, William (NIH/NCI) [C]

Verified on PROD. Thanks!

Attachments
File Name Posted User
image-2024-03-28-11-58-01-111.png 2024-03-28 11:58:01 Osei-Poku, William (NIH/NCI) [C]

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