CDR Tickets

Issue Number 3279
Summary [Terminology] Term import error
Created 2010-12-09 09:48:51
Issue Type Bug
Submitted By Osei-Poku, William (NIH/NCI) [C]
Assigned To Kline, Bob (NIH/NCI) [C]
Status Closed
Resolved 2010-12-13 15:09:00
Resolution Won't Fix
Path /home/bkline/backups/jira/ocecdr/issue.107607
Description

BZISSUE::4969
BZDATETIME::2010-12-09 09:48:51
BZCREATOR::William Osei-Poku
BZASSIGNEE::Bob Kline
BZQACONTACT::William Osei-Poku

There seems to be a problem with terminology imports from the NCI Thesaurus. The error message this is error message we are getting (for NCIT - C91700 CDR -257613)

"Import cannot be completed since preferred names do not match. (CDR: 'ONCOLYTIC NEWCASTLE DISEASE VIRUS' and NCIT: '<ERROR>FAILURE PARSING CONCEPT: NO ELEMENT FOUND: LINE 2, COLUMN 0</ERROR>')"

Could you please look into this?

Comment entered 2010-12-09 10:26:54 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-12-09 10:26:54
BZCOMMENTOR::Bob Kline
BZCOMMENT::1

I have reported the problem on the caBIG forum site.

Comment entered 2010-12-09 10:31:14 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-12-09 10:31:14
BZCOMMENTOR::Bob Kline
BZCOMMENT::2

Just to be clear: my investigations found that the response document received from their API was deficient for C91700, but not for any of the other concepts I tested. However, your problem report appeared to indicate a more general failure ("... a problem with terminology imports"). Does the use of the plural "imports" mean that this failure has occurred for other concepts? If so, could you please provide me with the concept IDs for the others which are failing? Are you unable to import any concepts at all?

Comment entered 2010-12-09 11:42:42 by Osei-Poku, William (NIH/NCI) [C]

BZDATETIME::2010-12-09 11:42:42
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::3

Yes. It appears to be a general failure.
I tried the following updates and got similar error message:

C91394 - CDR672901
C91375 - CDR672648

I will try and get you additional concepts for new imports (ones without cdr records).

Comment entered 2010-12-13 15:00:17 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-12-13 15:00:17
BZCOMMENTOR::Bob Kline
BZCOMMENT::4

I heard back from the caBIG team. They said the concepts you're not able to import were added recently and there's a lag between when the concepts get published and when they're available to the service. They didn't say how long the lag typically is, so I guess you'll just have to keep trying until it works.

Comment entered 2010-12-13 15:09:00 by Osei-Poku, William (NIH/NCI) [C]

BZDATETIME::2010-12-13 15:09:00
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::5

OK. Thanks!
Issue closed!

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