CDR Tickets

Issue Number 3086
Summary Cancer diagnosis Hierarchy report(s) error
Created 2010-02-12 14:40:44
Issue Type Bug
Submitted By Osei-Poku, William (NIH/NCI) [C]
Assigned To Kline, Bob (NIH/NCI) [C]
Status Closed
Resolved 2010-03-04 10:04:48
Resolution Fixed
Path /home/bkline/backups/jira/ocecdr/issue.107414
Description

BZISSUE::4762
BZDATETIME::2010-02-12 14:40:44
BZCREATOR::William Osei-Poku
BZASSIGNEE::Bob Kline
BZQACONTACT::William Osei-Poku

The Cancer Diagnosis Hierarchy reports return python script errors when we access them.

The following error message is displayed when we click on the link:

A problem occurred in a Python script.

d:\cdr\Log\tmpvz27tq.html contains the description of this error. D:\Python\lib\cgitb.py:173: DeprecationWarning: BaseException.message has been deprecated as of Python 2.6 value = pydoc.html.repr(getattr(evalue, name))

Comment entered 2010-02-12 15:04:00 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-02-12 15:04:00
BZCOMMENTOR::Bob Kline
BZCOMMENT::1

Yes, I'm seeing the same error. Let me see if I can track it down.

Comment entered 2010-02-12 16:54:51 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-02-12 16:54:51
BZCOMMENTOR::Bob Kline
BZCOMMENT::2

Hmm, looks like a data error. The report starts out by looking for the Terminology document for "cancer" but can't find it. Seems like an odd term to go missing at the National Cancer Institute. Any idea what might have happened? It's just a problem on Bach (Franck still has the term).

Comment entered 2010-02-12 17:15:58 by Osei-Poku, William (NIH/NCI) [C]

BZDATETIME::2010-02-12 17:15:58
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::3

(In reply to comment #2)
> Hmm, looks like a data error. The report starts out by looking for the
> Terminology document for "cancer" but can't find it. Seems like an odd term to
> go missing at the National Cancer Institute. Any idea what might have
> happened? It's just a problem on Bach (Franck still has the term).

As you may have seen in Mary's email, she is making terminology-related changes so that may be causing the problem.

Comment entered 2010-02-12 17:21:42 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-02-12 17:21:42
BZCOMMENTOR::Bob Kline
BZCOMMENT::4

Is this change permanent? Will she be making it to all the servers? Do you want me to modify the report to look for the new name for "cancer" instead?

Comment entered 2010-02-15 09:59:22 by Osei-Poku, William (NIH/NCI) [C]

BZDATETIME::2010-02-15 09:59:22
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::5

(In reply to comment #4)
> Is this change permanent?
Yes

> Will she be making it to all the servers?
No. Only on Bach.
>Do you
> want me to modify the report to look for the new name for "cancer" instead?

Mary posed a question in the email about some of the changes she was making. Depending on the response she receives, she may either reverse some of the changes or make additional changes. I will therefore suggest that you do not fix this problem until all her concerns are addressed.

Comment entered 2010-02-19 13:09:25 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-02-19 13:09:25
BZCOMMENTOR::Bob Kline
BZCOMMENT::6

Comment entered 2010-03-03 15:35:21 by Osei-Poku, William (NIH/NCI) [C]

BZDATETIME::2010-03-03 15:35:21
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::7

I think it is OK to fix this report at this point. From previous discussions it does not look like there will be additional changes. Also, it appears the changes are unlikely to be reversed.

Comment entered 2010-03-03 15:46:04 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-03-03 15:46:04
BZCOMMENTOR::Bob Kline
BZCOMMENT::8

(In reply to comment #7)
> I think it is OK to fix this report at this point. From previous discussions it
> does not look like there will be additional changes. Also, it appears the
> changes are unlikely to be reversed.

So, what name should the report look for instead of "cancer"?

Comment entered 2010-03-03 15:54:21 by Osei-Poku, William (NIH/NCI) [C]

BZDATETIME::2010-03-03 15:54:21
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::9

(In reply to comment #8)
> (In reply to comment #7)
> > I think it is OK to fix this report at this point. From previous discussions it
> > does not look like there will be additional changes. Also, it appears the
> > changes are unlikely to be reversed.
>
> So, what name should the report look for instead of "cancer"?

Malignant Neoplasm. This is the term that replaced "cancer".

Comment entered 2010-03-03 16:04:45 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2010-03-03 16:04:45
BZCOMMENTOR::Bob Kline
BZCOMMENT::10

I've modified the report to look for "Malignant Neoplasm" instead of "cancer." The report will be broken on Franck and Mahler until someone changes the name to match Bach.

Comment entered 2010-03-04 10:04:48 by Osei-Poku, William (NIH/NCI) [C]

BZDATETIME::2010-03-04 10:04:48
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::11

(In reply to comment #10)
> I've modified the report to look for "Malignant Neoplasm" instead of "cancer."
> The report will be broken on Franck and Mahler until someone changes the name
> to match Bach.

Verified on Bach. Thank you!

Elapsed: 0:00:00.001697