| Issue Number | 4567 |
|---|---|
| Summary | [Gene Name Display] Allow italicized gene names in summary fragment refs |
| Created | 2019-01-30 11:33:12 |
| Issue Type | Improvement |
| Submitted By | Osei-Poku, William (NIH/NCI) [C] |
| Assigned To | Englisch, Volker (NIH/NCI) [C] |
| Status | Closed |
| Resolved | 2020-05-11 18:28:39 |
| Resolution | Fixed |
| Path | /home/bkline/backups/jira/ocecdr/issue.239378 |
We would want the ability to add gene name tags to text within summary fragment refs. CDR 62923 (CH ALL) has been marked up on DEV as a sample. Please look for two instances under the "Treatment options for infants with MLL KMT2A rearrangements" section.
This ticket will likely involve the following tasks:
Schema change to allow GeneName elements within SummaryFragmentRef elements
Filter changes for QC reports
Filter changes for vendor output
Possibly Gatekeeper changes to properly process the new element
I will try to find out if GK changes will be necessary.
Should I create a separate ticket for the QC report modification ?
~oseipokuw, it appears that the marked up document on DEV has been overwritten since you submitted this ticket.
Could you mark-up a document again, please, so that I can see exactly what you are asking?
Adding ~duganal to this ticket because it will require coordination with the Cancer.gov team. As far as I know we currently don't display anchor links with markup on our site.
An updated schema file has been posted:
CdrCommonBase.xml
The following changes have been implemented:
CDR797103 - Cancer Information Summary for Drupal CMS
https://github.com/NCIOCPL/cdr-server/commit/e5fbd7e
pdq.dtd
https://github.com/NCIOCPL/cdr-publishing/commit/b56de64
pdqCG.dtd
https://github.com/NCIOCPL/cdr-publishing/commit/b56de64
CdrCommonBase
https://github.com/NCIOCPL/cdr-server/commit/427aa24
This is ready for review on DEV.
Verified on DEV. Thanks!
Verified on QA. Thanks!
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