CDR Tickets

Issue Number 3479
Summary [Citations] Unable to import citations into the CDR
Created 2012-02-16 09:52:20
Issue Type Improvement
Submitted By Osei-Poku, William (NIH/NCI) [C]
Assigned To Kline, Bob (NIH/NCI) [C]
Status Closed
Resolved 2012-03-01 09:34:09
Resolution Fixed
Path /home/bkline/backups/jira/ocecdr/issue.107807
Description

BZISSUE::5174
BZDATETIME::2012-02-16 09:52:20
BZCREATOR::William Osei-Poku
BZASSIGNEE::Bob Kline
BZQACONTACT::William Osei-Poku

We are unable to import citations into the CDR using the Advanced Search Interface. Users keep getting "Article Not Found" error messages for articles that we know exist in PubMed. Here are sample documents for testing:

Mvundura PMID: 20084010
Chubak PMID: 21407081
NSGC Riley PMID: 22134580
Hasenbring PMID: 21194311

It looks like the last time users were able to import citations using the interface was yesterday in the morning. Example: CDR726558

Comment entered 2012-02-16 10:44:35 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2012-02-16 10:44:35
BZCOMMENTOR::Bob Kline
BZCOMMENT::1

Problem reported to NLM.

Comment entered 2012-02-21 09:59:42 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2012-02-21 09:59:42
BZCOMMENTOR::Bob Kline
BZCOMMENT::2

The service we were using is still broken, and I never got a response from my failure report to NLM (not very surprising). I found another service for fetching the citations, I have rewritten the import script to use that service. The modifications to the software are extensive, so it would be a good idea to test thoroughly. The new version is installed on Mahler.

Comment entered 2012-02-21 13:14:37 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2012-02-21 13:14:37
BZCOMMENTOR::Bob Kline
BZCOMMENT::3

[Posted for William]

Hi Bob,
I am unable to access bugzilla from our corporate office in Fairfax. This has been tested. Please promote to Bach.
Thanks,
William

Comment entered 2012-02-21 13:16:04 by Kline, Bob (NIH/NCI) [C]

BZDATETIME::2012-02-21 13:16:04
BZCOMMENTOR::Bob Kline
BZCOMMENT::4

(In reply to comment #3)

> Please promote to Bach.

Done.

Comment entered 2012-03-01 09:34:09 by Osei-Poku, William (NIH/NCI) [C]

BZDATETIME::2012-03-01 09:34:09
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::5

(In reply to comment #4)
> (In reply to comment #3)
>
> > Please promote to Bach.
>
> Done.

Verified. Issue closed. Thanks!

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