Issue Number | 3302 |
---|---|
Summary | [CTGovTransfer] FORCE TRANSFER CONVERSION OF IN-SCOPE TO CTGOV PROTOCOL |
Created | 2011-01-25 15:14:12 |
Issue Type | Improvement |
Submitted By | Osei-Poku, William (NIH/NCI) [C] |
Assigned To | Kline, Bob (NIH/NCI) [C] |
Status | Closed |
Resolved | 2011-02-03 11:13:52 |
Resolution | Fixed |
Path | /home/bkline/backups/jira/ocecdr/issue.107630 |
BZISSUE::4993
BZDATETIME::2011-01-25 15:14:12
BZCREATOR::William Osei-Poku
BZASSIGNEE::Bob Kline
BZQACONTACT::William Osei-Poku
The following trials need to be manually updated in the ctgov_import
table.
We attempted to transfer them by adding ctgov ownership transfer block
but that did not work probably because their NCT IDs are connected to
trials that have been marked as duplicates in the ctgov_import table.
They are mostly trials we initially imported from NLM but we had to
block them in favor of Inscope protocols. But now we need to transfer
the InScope protocols to the responsible parties.
I believe all of the trials fall into the same category but let me know if I need to create new issues for some of them.
Currently, the existing CTGOV protocols are not being updated because they don't exist on ct.gov as original ctgov documents. Our preference is to have the InScope protocols converted into CTGov documents normally so that the existing ctgov protocols will remain blocked.
InScope CDR ID InScope NCT ID CTGov CDR ID CTGov NCT ID
1. CDR0000550133 NCT00380029 CDR0000511871 NCT00380029
2. CDR0000550139 NCT00283244 CDR0000471946 NCT00283244
3. CDR0000550142 NCT00280150 CDR0000467811 NCT00280150
4. CDR0000550165 NCT00225420 CDR0000451754 NCT00225420
5. CDR0000550699 NCT00266110 CDR0000462326 NCT00266110
6. CDR0000550950 NCT00379509 CDR0000511861 NCT00379509
7. CDR0000561688 NCT00280761 CDR0000467197 NCT00280761
I have also attached a spreadsheet of the trials.
BZDATETIME::2011-01-25 15:16:35
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::1
> I have also attached a spreadsheet of the trials.
..and now the attachment (it failed to attach it in the original submission)
Attachment Problem Transfers.xlsx has been added with description: Problem transfers
BZDATETIME::2011-02-02 11:57:02
BZCOMMENTOR::Bob Kline
BZCOMMENT::2
If I understand this request correctly, the following steps need to happen:
1. find rows in ctgov_import corresponding to values in column
B
2. set cdr_id column for those rows to integer for value in column
A
3. set disposition for rows to 'import requested'
4. fill xml columns from documents received the night before from
NLM
5. set changed and dt columns to current date/time
6. append to comment columns documenting what we've done
7. run import job by hand
It might seem attractive to perform all steps but the last and let the scheduled import job take care of step 7, but I believe we've tried that approach in the past and have been tripped up by the download job undoing some of the work we did in the previous steps. If it helps CIAT's processing, we can try to perform the manual invocation of the import job closer to the beginning or end of the work day.
Assuming my analysis is correct, only the first two columns in the spreadsheet attached to the issue are needed for the task. The NCT IDs in column D are identical to the values in column B, and there's nothing I need to do with the values in columns C or E, right? I propose calling this type of request "FORCE TRANSFER CONVERSION OF IN-SCOPE TO CTGOV PROTOCOL" so that we can easily identify future requests to perform this same sequence of steps, and using a spreadsheet with only two columns: CDR ID (integer only) in column A and NCT ID in column B. No header row would be needed. It won't be necessary to resubmit the spreadsheet for this request, but let's use that format for future jobs of this type.
Does all of this seem reasonable?
BZDATETIME::2011-02-02 13:42:14
BZCOMMENTOR::Bob Kline
BZCOMMENT::3
Turns out we needed a replacement version of the spreadsheet after all. Until there's a module available for reading the newer XML-based spreadsheets Excel creates we'll need to use Excel-97 style workbooks.
Attachment task4993.xls has been added with description: Excel-97 version of worksheet, modified to match specs in comment #2
BZDATETIME::2011-02-02 14:11:24
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::4
(In reply to comment #2)
> If it helps CIAT's processing, we
> can try to perform the manual invocation of the import job closer
to the
> beginning or end of the work day.
>
Closer to the end of the day should be fine. We are now aware that
running the import job manually affects all documents that have been
marked to be imported. That was one of the causes of our confusion but
since we are aware of that now there shouldn't be any confusion.
> Assuming my analysis is correct, only the first two columns in
the spreadsheet
> attached to the issue are needed for the task. The NCT IDs in
column D are
> identical to the values in column B, and there's nothing I need to
do with the
> values in columns C or E, right?
That is correct.
>I propose calling this type of request "FORCE
> TRANSFER CONVERSION OF IN-SCOPE TO CTGOV PROTOCOL" so that we can
easily
> identify future requests to perform this same sequence of steps,
and using a
> spreadsheet with only two columns: CDR ID (integer only) in column
A and NCT ID
> in column B. No header row would be needed. It won't be necessary
to resubmit
> the spreadsheet for this request, but let's use that format for
future jobs of
> this type.
>
Agreed. However, there is another scenario where it would be necessary
to include a third column in the spreadsheet. That is, when NCT IDs are
different for the InScopeProtocol and CTGovProtocol documents and one of
them is active. I guess we can title that differently at the appropriate
time.e.
> Does all of this seem reasonable?
Yes.
>Turns out we needed a replacement version of the spreadsheet
after all.
>Until there's a module available for reading the newer
XML-based
>spreadsheets Excel creates we'll need to use Excel-97 style
>workbooks.
I have attached the new spreadsheet.
Attachment Problem Transfers.xls has been added with description: Problem transfers
BZDATETIME::2011-02-02 14:12:28
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::5
updated title
BZDATETIME::2011-02-02 18:09:38
BZCOMMENTOR::Bob Kline
BZCOMMENT::6
Done.
BZDATETIME::2011-02-03 11:13:52
BZCOMMENTOR::William Osei-Poku
BZCOMMENT::7
(In reply to comment #6)
> Done.
Verified. Thanks!
Issue closed.
File Name | Posted | User |
---|---|---|
Problem Transfers.xls | 2011-02-02 14:11:24 | Osei-Poku, William (NIH/NCI) [C] |
Problem Transfers.xlsx | 2011-01-25 15:16:35 | Osei-Poku, William (NIH/NCI) [C] |
task4993.xls | 2011-02-02 13:42:14 |
Elapsed: 0:00:00.000531