CDR Tickets

Issue Number 4390
Summary [Misc Docs] Misc Doc QC Report Missing Glossary Terms and Placeholder Text
Created 2018-01-17 16:24:33
Issue Type Bug
Submitted By Juthe, Robin (NIH/NCI) [E]
Assigned To Englisch, Volker (NIH/NCI) [C]
Status Closed
Resolved 2018-05-31 17:26:39
Resolution Fixed
Path /home/bkline/backups/jira/ocecdr/issue.219878
Description

The miscellaneous document QC report is missing linked glossary terms. The linked text is missing altogether.

Example: CDR0000584249 - Patient Summary Fragments

I'll attach a screenshot.

Comment entered 2018-01-17 16:30:49 by Kline, Bob (NIH/NCI) [C]

I will be surprised if this isn't the same bug I fixed for OCECDR-4389.

Comment entered 2018-01-18 11:54:15 by Kline, Bob (NIH/NCI) [C]

It's not. We'll keep investigating.

Comment entered 2018-01-18 13:58:08 by Juthe, Robin (NIH/NCI) [E]

Placeholder text also does not display on the QC report. (see attachment)

However, this issue appears to be on PROD as well, so I'm moving this into Hawking.

Comment entered 2018-05-30 14:03:52 by Englisch, Volker (NIH/NCI) [C]

, what should be displayed for the placeholder on the QC report? Just the name of the placeholder or PlaceHolder?

Comment entered 2018-05-30 14:07:25 by Juthe, Robin (NIH/NCI) [E]

Is it possible to display the actual text? In the examples above, the missing text is a linked glossary term. Ideally, we'd like to see the linked term in the text.

Comment entered 2018-05-30 14:12:35 by Englisch, Volker (NIH/NCI) [C]

Absolutely, for the case when the GlossaryTermRef is missing we're including the element's text but in the case when the PlaceHolder is missing I don't know what to replace it with. In XMetaL we're displaying [ClinicalTrialSearchLink] or whatever name attribute you gave the PlaceHolder.

Are we going to display the same in the QC report?

Comment entered 2018-05-30 14:21:20 by Juthe, Robin (NIH/NCI) [E]

Ah, I see. Yes, let's display the same filler text for the placeholder element on the QC report. We'll probably need to look at some examples of this to be sure it works for the different types of placeholder elements that could be present, but that seems like a reasonable place to start. Thanks.

Comment entered 2018-05-30 15:53:32 by Englisch, Volker (NIH/NCI) [C]

In the summaries the glossaries are linking to the Glossary QC reports.
Are we doing the same here? Will there be markup to account for or do we just want to see the text?

Comment entered 2018-05-30 16:06:36 by Englisch, Volker (NIH/NCI) [C]

The following filters have been modified on DEV to display the PlaceHolder text and GlossaryTermRef elements:

  • CDR000154: Miscellaneous Document Report Filter

  • CDR335169: Module: STYLE Default

Comment entered 2018-05-31 14:34:58 by Juthe, Robin (NIH/NCI) [E]

We decided it will be fine to just show the text.

Comment entered 2018-05-31 17:26:31 by Englisch, Volker (NIH/NCI) [C]

The changes have been uploaded to github to the branch cdr4390-miscdoc:
https://github.com/NCIOCPL/cdr-server/commit/d27291d

This is ready for review on DEV.

Comment entered 2018-06-01 13:51:22 by Englisch, Volker (NIH/NCI) [C]

, where you able to take a look at the misc doc QC report on DEV?
Since this is a small change I would like to put the filter changes on PROD prior to refreshing the CDR database.

Comment entered 2018-06-01 13:53:16 by Juthe, Robin (NIH/NCI) [E]

Is it safe to look on DEV now?

Comment entered 2018-06-01 13:55:30 by Englisch, Volker (NIH/NCI) [C]

Yes, as far as I know. Bob reported the restore of the archive DB was done.

Comment entered 2018-06-01 13:59:26 by Juthe, Robin (NIH/NCI) [E]

Thanks. This looks good to me on DEV!

Comment entered 2018-06-01 14:57:05 by Englisch, Volker (NIH/NCI) [C]

Those filter changes listed above have been copied to QA, STAGE, and PROD.

Please verify on PROD and close this ticket.

Comment entered 2018-06-07 11:14:24 by Juthe, Robin (NIH/NCI) [E]

Verified on PROD. Thanks!

Attachments
File Name Posted User
misc doc placeholders.png 2018-01-18 13:57:13 Juthe, Robin (NIH/NCI) [E]
misc doc qc report.png 2018-01-17 16:26:51 Juthe, Robin (NIH/NCI) [E]

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